Tools

We aim to develop statistical and computational software for analyzing large-scale biological and medical data. All of our software, pipeline, datasets are open-source. We believe in reproducibility in science and committed to make our code cleanly written, well-documented and reproducbile.

For a full list of our software/database, please see our Github page.

HLADiversity

The goal of HLADiversity is to estimate the distinctiveness of HLA alleles.

bioinformatic pipeline

HLA-TAPAS

HLA-TAPAS (HLA-Typing At Protein for Association Studies) is an HLA-focused pipeline that can handle HLA reference panel construction (MakeReference), HLA imputation (SNP2HLA), and HLA association (HLAassoc).

bioinformatic pipeline

covariate-adjusted LD score regression

cov-LDSC is a method to provide robust hg2 estimates from GWAS summary statistics and in-sample LD estimates in admixed populations.

software